Week 3¶

Meal Times: Breakfast 7-9, Lunch 12-1, Dinner 6-7 (Unless noted below)

Etherpad: https://etherpad.mozilla.org/ngs2015-week3

Day	Schedule
Monday 8/24	1:30pm: welcome & startup (AWS) 3pm: A hands-on introduction to Docker (Titus) evening: research presentations by students
Tuesday 8/25	9:15am: Effective visualizations and stats for NGS - stats1, stats2 (Ryan) 1:15pm: Assembly using velvet (Lex) 4:15pm: Reproducible data analysis with RMarkdown and Git through RStudio (Marian) (source) Bells
Wednesday 8/25	9:15am: Statistical models for differential expression analysis (Meeta) 1:15pm: Pathway analysis with RNAseq (Asela) 7:15pm: Genome Wide Association Studies (Tiffany)
Thursday 8/25	9:15am: Achieving Reproducibility with AWS (Leigh) 1:15pm: Differential expression and detecting dosage compensation in RNAseq (Chris Hamm) (source) 7pm: firepit
Friday 8/25	9am: GitHub, Pull Requests, and ReadTheDocs (Titus) 11:15am: discussion noon: fare-thee-well lunch

Workshop organizers:¶

C. Titus Brown

Amanda Charbonneau

Invited lecturers:¶

Chris Hamm

Meeta Mistry

Lex Nederbragt

Marian Schmidt

Leigh Sheneman

Tiffany Timbers, Simon Fraser University

Asela Wijeratne

Ryan Williams

LICENSE: This documentation and all textual/graphic site content is licensed under the Creative Commons - 0 License (CC0) -- fork @ github. Presentations (PPT/PDF) and PDFs are the property of their respective owners and are under the terms indicated within the presentation.